type_hints#

class AdjusterScope(value)[source]#

Bases: Enum

EXPERIMENT = 'experiment'#

GROUP = 'group'#

class AdjustmentContext(scope: 'AdjusterScope', sample_manager: 'Optional[SampleManagerProtocol]' = None, group_base_dir: 'Optional[Path]' = None, run_label: 'str' = '')[source]#

Bases: object

group_base_dir: Path | None#

run_label: str#

sample_manager: SampleManagerProtocol | None#

scope: AdjusterScope#

class SampleManagerProtocol(*args, **kwargs)[source]#

Bases: Protocol

colocalization_pair_keys(*, oriented: bool = False) → List[str][source]#

colocalization_pairs(*, oriented: bool = False) → List[Tuple[str, str]][source]#

compute_required_sections()[source]#

data_type(channel: str) → str | None[source]#

get_channels_by_pipeline(pipeline: str, as_list: bool = False) → List[str][source]#

property alignment_reference_channel: str | None#

property channels: List[str]#

property channels_to_detect: List[str]#

property is_colocalization_compatible: bool#

property renamed_channels: Dict[str, str]#

property stitchable_channels: List[str]#

identity_fn(k)[source]#