Transformation

Abstract base class to handle transformation of coordinates and data when cropping data or mapping between raw data and reference atlases.

class Transformation(transformations=None, inverse=False)

Bases: TransformationBase

classmethod from_dict(dictionary: dict)

get_transformations(inverse=False, start_at=None, stop_at=None) → list

to_dict() → dict

transform_data(source, inverse=False, start_at=None, stop_at=None, **kwargs)

transform_points(source, inverse=False, start_at=None, stop_at=None, **kwargs)

transform_shape(shape, inverse=False, start_at=None, stop_at=None, **kwargs)

ttype = 'Transformation'

class TransformationBase(inverse=False)

Bases: object

Base class for transformations of data, points and shapes.

classmethod from_dict(dictionary: dict)

get_inverse(inverse=False)

classmethod read(filename)

to_dict() → dict

transform_data(source, inverse=False, **kwargs)

transform_points(source, inverse=False, **kwargs)

transform_shape(shape, inverse=False, **kwargs)

write(filename)

ttype = None

transformation_from_dict(dictionary)