ClearMap.Analysis#

ClearMap analysis and statistics toolbox.

This part of ClearMap provides a toolbox for the statistical analysis and visualization of detected cells or brain structures.

Key modules are:

Module

Description

Measurements

Measure expression or morphology, density maps.

Graphs

Graph construction and analysis for large graphs.

Statistics

Statistical tools.

See below for a detailed description of each module.


Sub-packages and modules#

ClearMap.Analysis.Curves

Functions to manipulate curves, including interpolation, extra-polation, smoothing, etc.

ClearMap.Analysis.DimensionReduction

Module hosting dimension reduction and embedding routines.

ClearMap.Analysis.Graphs

Provides classes and routines for the analysis of large graphs.

ClearMap.Analysis.Measurements

Provides classes and routines to make measurements in large arrays.

ClearMap.Analysis.Statistics

Collection of useful analysis and statistics tools.

ClearMap.Analysis.vasculature